Variant report

Variant	rs56982777
Chromosome Location	chr1:185366860-185366861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10159387	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11803475	1.00[EUR][1000 genomes]
rs12061799	1.00[EUR][1000 genomes]
rs55668166	1.00[EUR][1000 genomes]
rs55722516	1.00[EUR][1000 genomes]
rs55749359	1.00[EUR][1000 genomes]
rs57855737	1.00[EUR][1000 genomes]
rs58168300	1.00[EUR][1000 genomes]
rs58963489	1.00[EUR][1000 genomes]
rs59444721	1.00[EUR][1000 genomes]
rs60416788	1.00[EUR][1000 genomes]
rs6673367	1.00[EUR][1000 genomes]
rs73052265	1.00[EUR][1000 genomes]
rs73052267	1.00[EUR][1000 genomes]
rs73052272	1.00[EUR][1000 genomes]
rs7550745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185349800-185370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:185359800-185368400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:185363200-185368400	Weak transcription	HMEC	breast
4	chr1:185363400-185369200	Weak transcription	NHEK	skin
5	chr1:185363600-185368400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:185363600-185369400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:185363600-185369400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:185365800-185368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:185366200-185368600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:185366800-185367200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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