Variant report

Variant	rs10159387
Chromosome Location	chr1:185346410-185346411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11803475	1.00[EUR][1000 genomes]
rs12061799	1.00[EUR][1000 genomes]
rs55668166	1.00[EUR][1000 genomes]
rs55722516	1.00[EUR][1000 genomes]
rs55749359	1.00[EUR][1000 genomes]
rs56982777	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57855737	1.00[EUR][1000 genomes]
rs58168300	1.00[EUR][1000 genomes]
rs58963489	1.00[EUR][1000 genomes]
rs59444721	1.00[EUR][1000 genomes]
rs60416788	1.00[EUR][1000 genomes]
rs6666363	0.85[AFR][1000 genomes]
rs6673367	1.00[EUR][1000 genomes]
rs73052265	1.00[EUR][1000 genomes]
rs73052267	1.00[EUR][1000 genomes]
rs73052272	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185342000-185347400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:185343000-185347200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:185344000-185346800	Enhancers	HUVEC	blood vessel
4	chr1:185344400-185346600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr1:185344600-185346600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:185346000-185347600	Enhancers	Osteobl	bone
7	chr1:185346200-185346600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:185346200-185346800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:185346200-185347600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:185346400-185346600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:185346400-185346600	Enhancers	NH-A	brain
12	chr1:185346400-185346800	Weak transcription	Primary B cells from cord blood	blood
13	chr1:185346400-185347000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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