Variant report

Variant	rs73052267
Chromosome Location	chr1:185320630-185320631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10159387	1.00[EUR][1000 genomes]
rs11803475	1.00[EUR][1000 genomes]
rs12061799	1.00[EUR][1000 genomes]
rs55668166	1.00[EUR][1000 genomes]
rs55722516	1.00[EUR][1000 genomes]
rs55749359	1.00[EUR][1000 genomes]
rs56982777	1.00[EUR][1000 genomes]
rs57855737	1.00[EUR][1000 genomes]
rs58168300	1.00[EUR][1000 genomes]
rs58963489	1.00[EUR][1000 genomes]
rs59444721	1.00[EUR][1000 genomes]
rs60416788	1.00[EUR][1000 genomes]
rs6673367	1.00[EUR][1000 genomes]
rs73052265	1.00[EUR][1000 genomes]
rs73052272	1.00[EUR][1000 genomes]
rs7550745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv2756872	chr1:185293197-185345771	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2758981	chr1:185293197-185345771	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185313800-185327800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:185317400-185321000	Enhancers	Fetal Intestine Large	intestine
3	chr1:185317400-185321200	Enhancers	Fetal Intestine Small	intestine
4	chr1:185317600-185329400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:185318400-185322000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:185318600-185321400	Enhancers	NHEK	skin
7	chr1:185318600-185321800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:185319000-185321200	Enhancers	HepG2	liver
9	chr1:185319600-185321400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr1:185319600-185323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:185319600-185324400	Weak transcription	Fetal Kidney	kidney
12	chr1:185319600-185330200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:185319600-185335600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:185320200-185321200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:185320400-185321000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:185320400-185322000	Enhancers	Fetal Heart	heart
17	chr1:185320600-185320800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:185320600-185320800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:185320600-185321000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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