Variant report

Variant	rs6064134
Chromosome Location	chr20:53499955-53499956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12625335	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4809974	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4809975	0.83[ASN][1000 genomes]
rs4811543	0.83[ASN][1000 genomes]
rs4811545	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4811548	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6023670	0.82[ASN][1000 genomes]
rs6023671	0.81[ASN][1000 genomes]
rs6023672	0.82[ASN][1000 genomes]
rs6064126	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6064130	0.81[ASN][1000 genomes]
rs6064135	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6064137	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6069019	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6069023	0.81[ASN][1000 genomes]
rs6069036	0.92[ASN][1000 genomes]
rs6069038	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6069043	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6123425	0.81[ASN][1000 genomes]
rs6123427	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6127305	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6127308	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6127311	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6127315	0.90[ASN][1000 genomes]
rs6127316	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6127317	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6127318	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73624159	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs958880	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv521883	chr20:53497139-53563837	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv524442	chr20:53497139-53563837	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53495400-53508800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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