Variant report

Variant	rs73624159
Chromosome Location	chr3:119100758-119100759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12625335	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4809974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4809975	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4811543	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4811545	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4811548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6023670	0.90[ASN][1000 genomes]
rs6023671	0.89[ASN][1000 genomes]
rs6023672	0.88[ASN][1000 genomes]
rs6064126	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6064130	0.89[ASN][1000 genomes]
rs6064134	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6064135	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6064137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6069019	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6069023	0.89[ASN][1000 genomes]
rs6069036	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6069038	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6069043	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6123425	0.89[ASN][1000 genomes]
rs6123427	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6127305	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6127308	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6127311	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6127315	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6127316	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6127317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6127318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs958880	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3962	chr3:119094646-119135321	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:119072000-119109200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:119072000-119133800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:119072200-119101400	Weak transcription	HSMM	muscle
5	chr3:119072200-119109600	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:119072200-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:119073000-119101000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:119076400-119101800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:119076400-119102000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:119076400-119109200	Weak transcription	Colonic Mucosa	Colon
11	chr3:119076400-119109200	Weak transcription	Esophagus	oesophagus
12	chr3:119076600-119101400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:119078800-119111400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:119079000-119102000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:119079400-119109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:119079800-119110000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:119080000-119145600	Weak transcription	Fetal Kidney	kidney
18	chr3:119081200-119135600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:119081400-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:119082800-119138000	Weak transcription	Small Intestine	intestine
21	chr3:119085000-119109200	Weak transcription	Pancreas	Pancrea
22	chr3:119085200-119139000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:119086400-119110000	Weak transcription	Fetal Thymus	thymus
24	chr3:119087400-119101200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:119087400-119101800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:119087800-119101000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:119087800-119101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:119088000-119101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:119088000-119101800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:119088000-119134200	Weak transcription	NHDF-Ad	bronchial
31	chr3:119088200-119122400	Weak transcription	Brain Angular Gyrus	brain
32	chr3:119088400-119101200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:119088600-119109200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:119091800-119109200	Weak transcription	Gastric	stomach
35	chr3:119092800-119105600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:119093000-119103600	Strong transcription	Lung	lung
37	chr3:119093000-119103800	Strong transcription	Fetal Stomach	stomach
38	chr3:119093000-119116200	Weak transcription	Psoas Muscle	Psoas
39	chr3:119094400-119119600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:119094600-119108800	Weak transcription	Fetal Intestine Large	intestine
41	chr3:119095800-119102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:119097000-119101800	Weak transcription	Aorta	Aorta
43	chr3:119097000-119102000	Weak transcription	Right Atrium	heart
44	chr3:119097000-119132600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:119097200-119109800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:119097400-119103600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr3:119097600-119109400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:119097600-119120600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:119097800-119102000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr3:119097800-119103600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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