Variant report

Variant	rs60646396
Chromosome Location	chr1:220513186-220513187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6541138	1.00[EUR][1000 genomes]
rs73098562	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220510000-220513200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:220510600-220513200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:220510800-220525600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:220511200-220513800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:220511200-220514600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:220511200-220515200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:220511200-220526400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:220512000-220513200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:220512600-220514000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:220512800-220513800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:220513000-220513200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:220513000-220513200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:220513000-220513200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:220513000-220514000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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