The 2.0 version of rSNPBase

Variant report

Variant rs73098562
Chromosome Location chr1:220348158-220348159
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220305400-220376600 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:220306600-220348200 Strong transcription HUES64 Cell Line embryonic stem cell
3 chr1:220325000-220398400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr1:220325400-220356000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr1:220330600-220363600 Weak transcription Fetal Brain Male brain
6 chr1:220330800-220378600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:220331800-220354000 Weak transcription Right Ventricle heart
8 chr1:220332200-220352800 Strong transcription Cortex derived primary cultured neurospheres brain
9 chr1:220333000-220348600 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr1:220333200-220350000 Weak transcription Stomach Mucosa stomach
11 chr1:220333400-220348400 Strong transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:220337000-220352200 Strong transcription Fetal Intestine Large intestine
13 chr1:220337200-220348600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:220340200-220349800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:220340200-220349800 Weak transcription Pancreas Pancrea
16 chr1:220341000-220349800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:220341000-220353800 Weak transcription Psoas Muscle Psoas
18 chr1:220341000-220361000 Weak transcription Small Intestine intestine
19 chr1:220341200-220349800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr1:220341200-220350000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:220341200-220350600 Weak transcription Hela-S3 cervix
22 chr1:220341200-220364000 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:220341200-220369200 Weak transcription Fetal Heart heart
24 chr1:220342000-220348600 Weak transcription Fetal Intestine Small intestine
25 chr1:220342000-220350400 Weak transcription Fetal Brain Female brain
26 chr1:220342200-220352200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:220342800-220348800 Strong transcription Primary T helper naive cells fromperipheralblood blood
28 chr1:220343800-220357200 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr1:220344800-220349600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:220344800-220349800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:220344800-220365600 Weak transcription Brain Substantia Nigra brain
32 chr1:220345000-220348200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:220345200-220361200 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr1:220345400-220348600 Weak transcription Fetal Stomach stomach
35 chr1:220345400-220349800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:220345400-220349800 Weak transcription Brain Germinal Matrix brain
37 chr1:220345400-220349800 Weak transcription Brain Hippocampus Middle brain
38 chr1:220345400-220349800 Weak transcription Left Ventricle heart
39 chr1:220345400-220349800 Weak transcription Spleen Spleen
40 chr1:220345400-220350000 Weak transcription Ovary ovary
41 chr1:220345400-220350000 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:220345400-220354000 Weak transcription Brain Anterior Caudate brain
43 chr1:220345400-220354000 Weak transcription Brain Cingulate Gyrus brain
44 chr1:220345400-220354000 Weak transcription Colon Smooth Muscle Colon
45 chr1:220345400-220354400 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:220345400-220361800 Weak transcription Colonic Mucosa Colon
47 chr1:220345400-220391400 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr1:220345600-220349600 Weak transcription Placenta Amnion Placenta Amnion
49 chr1:220345600-220349800 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:220345600-220349800 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015