Variant report

Variant	rs874331
Chromosome Location	chr1:220333957-220333958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220331390..220335000-chr1:220342919..220345374,3	K562	blood:
2	chr1:220327602..220329309-chr1:220332621..220334178,2	K562	blood:

Variant related genes	Relation type
ENSG00000118873	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10127631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1039206	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10863539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10863540	0.82[ASN][1000 genomes]
rs11118501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11118506	0.82[ASN][1000 genomes]
rs11118509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11118510	0.82[ASN][1000 genomes]
rs1124763	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12022336	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12025326	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12025702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12026270	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12030504	0.82[ASN][1000 genomes]
rs12031256	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032536	0.91[ASN][1000 genomes]
rs12032738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033612	0.91[ASN][1000 genomes]
rs12037712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12040095	0.82[ASN][1000 genomes]
rs12043920	0.91[ASN][1000 genomes]
rs12045447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086105	0.82[ASN][1000 genomes]
rs12086760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17007107	1.00[YRI][hapmap]
rs17007135	0.83[YRI][hapmap]
rs17007139	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2577161	1.00[CEU][hapmap]
rs28650887	0.82[ASN][1000 genomes]
rs3767656	0.81[ASN][1000 genomes]
rs3820455	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs56357312	0.91[ASN][1000 genomes]
rs58966246	0.84[AFR][1000 genomes]
rs59935950	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6690426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73087829	0.82[ASN][1000 genomes]
rs73096595	0.83[AFR][1000 genomes]
rs73098512	0.83[AFR][1000 genomes]
rs73098518	0.83[AFR][1000 genomes]
rs73098527	0.84[AFR][1000 genomes]
rs73098528	0.84[AFR][1000 genomes]
rs73098530	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73098537	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73098540	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098550	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098562	0.92[AFR][1000 genomes]
rs73098567	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098569	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098579	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220298800-220334600	Strong transcription	Fetal Thymus	thymus
2	chr1:220304800-220335600	Strong transcription	Placenta	Placenta
3	chr1:220305400-220347000	Strong transcription	Dnd41	blood
4	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr1:220305600-220347600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:220305800-220347000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr1:220306600-220336600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:220306600-220346600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:220306600-220348200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:220308400-220339600	Weak transcription	Psoas Muscle	Psoas
11	chr1:220311200-220343400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:220311600-220335000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:220312200-220347400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:220318600-220335400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:220319000-220341400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:220320400-220341800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:220320600-220336600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:220322800-220334600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:220323000-220335000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr1:220323000-220341000	Strong transcription	HSMM	muscle
21	chr1:220323200-220334800	Strong transcription	NH-A	brain
22	chr1:220323200-220335000	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:220323800-220336600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:220323800-220348000	Strong transcription	Primary B cells from cord blood	blood
25	chr1:220324000-220334800	Strong transcription	Fetal Muscle Leg	muscle
26	chr1:220324000-220335800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr1:220324000-220347000	Strong transcription	HMEC	breast
28	chr1:220324600-220335200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr1:220325200-220335600	Strong transcription	Osteobl	bone
31	chr1:220325400-220334800	Strong transcription	Liver	Liver
32	chr1:220325400-220335000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:220325400-220343800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:220325400-220347000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:220325400-220356000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:220328000-220339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:220328000-220339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:220328000-220339800	Weak transcription	Colonic Mucosa	Colon
39	chr1:220330200-220334000	Weak transcription	Brain Substantia Nigra	brain
40	chr1:220330200-220345000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:220330600-220334000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:220330600-220339800	Weak transcription	Pancreas	Pancrea
43	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
44	chr1:220330800-220334000	Weak transcription	Fetal Lung	lung
45	chr1:220330800-220334200	Weak transcription	Brain Angular Gyrus	brain
46	chr1:220330800-220334200	Weak transcription	Lung	lung
47	chr1:220330800-220339600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:220330800-220339800	Weak transcription	Aorta	Aorta
49	chr1:220330800-220339800	Weak transcription	Esophagus	oesophagus
50	chr1:220330800-220339800	Weak transcription	Gastric	stomach

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