The 2.0 version of rSNPBase

Variant report

Variant rs12043920
Chromosome Location chr1:220382219-220382220
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220325000-220398400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:220345400-220391400 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:220348000-220386800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr1:220350000-220386200 Strong transcription Primary T helper cells fromperipheralblood blood
5 chr1:220350600-220387800 Weak transcription Stomach Mucosa stomach
6 chr1:220353200-220386600 Strong transcription HUES64 Cell Line embryonic stem cell
7 chr1:220353800-220386400 Strong transcription iPS-20b Cell Line embryonic stem cell
8 chr1:220354400-220386800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:220358600-220385800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:220359000-220385000 Strong transcription Liver Liver
11 chr1:220359200-220386000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:220359400-220385800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:220359400-220386800 Strong transcription Cortex derived primary cultured neurospheres brain
14 chr1:220366200-220392000 Weak transcription Brain Angular Gyrus brain
15 chr1:220368600-220383800 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:220370000-220385200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:220371400-220385400 Strong transcription Adipose Nuclei Adipose
18 chr1:220372600-220386200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:220373200-220384800 Strong transcription Duodenum Mucosa Duodenum
20 chr1:220373200-220392400 Weak transcription Fetal Brain Female brain
21 chr1:220374400-220382800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:220374400-220383800 Weak transcription Brain Cingulate Gyrus brain
23 chr1:220374400-220392200 Weak transcription Fetal Heart heart
24 chr1:220374600-220407600 Weak transcription Fetal Brain Male brain
25 chr1:220375600-220393400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:220375800-220383600 Weak transcription Fetal Stomach stomach
27 chr1:220376400-220383800 Weak transcription Fetal Intestine Small intestine
28 chr1:220376600-220383000 Weak transcription HMEC breast
29 chr1:220377200-220385600 Strong transcription Muscle Satellite Cultured Cells --
30 chr1:220378000-220386200 Strong transcription Primary T helper cells PMA-I stimulated --
31 chr1:220378200-220384800 Strong transcription Primary hematopoietic stem cells blood
32 chr1:220378200-220385600 Strong transcription Primary monocytes fromperipheralblood blood
33 chr1:220378200-220385600 Strong transcription Primary T cells fromperipheralblood blood
34 chr1:220378200-220385600 Strong transcription Dnd41 blood
35 chr1:220378200-220386200 Strong transcription Primary B cells from cord blood blood
36 chr1:220378200-220387000 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr1:220378400-220386000 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:220378600-220384800 Strong transcription Primary neutrophils fromperipheralblood blood
39 chr1:220378800-220386400 Strong transcription Primary B cells from peripheral blood blood
40 chr1:220378800-220398200 Weak transcription Psoas Muscle Psoas
41 chr1:220378800-220398200 Weak transcription Small Intestine intestine
42 chr1:220379000-220383600 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:220379000-220384800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:220379000-220385600 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr1:220379000-220385600 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr1:220379000-220386800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:220379000-220387200 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:220379000-220392600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr1:220379000-220393200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:220379000-220418200 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015