Variant report

Variant	rs73098553
Chromosome Location	chr1:220341393-220341394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220332088..220333949-chr1:220340621..220342512,2	K562	blood:
2	chr1:220336250..220338830-chr1:220341117..220343167,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10127631	0.82[ASN][1000 genomes]
rs1039206	0.83[AFR][1000 genomes]
rs10863539	0.82[ASN][1000 genomes]
rs10863540	0.82[ASN][1000 genomes]
rs11118501	0.91[ASN][1000 genomes]
rs11118506	0.82[ASN][1000 genomes]
rs11118509	0.82[ASN][1000 genomes]
rs11118510	0.82[ASN][1000 genomes]
rs1124763	0.83[AFR][1000 genomes]
rs12022336	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12025326	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12025702	0.91[ASN][1000 genomes]
rs12026270	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12030504	0.82[ASN][1000 genomes]
rs12031256	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032536	0.91[ASN][1000 genomes]
rs12032738	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033612	0.91[ASN][1000 genomes]
rs12037712	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12040095	0.82[ASN][1000 genomes]
rs12043920	0.91[ASN][1000 genomes]
rs12045447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086105	0.82[ASN][1000 genomes]
rs12086760	0.82[ASN][1000 genomes]
rs17007139	0.83[AFR][1000 genomes]
rs28650887	0.82[ASN][1000 genomes]
rs3767656	0.81[ASN][1000 genomes]
rs3820455	0.83[AFR][1000 genomes]
rs56357312	0.91[ASN][1000 genomes]
rs58966246	0.84[AFR][1000 genomes]
rs59935950	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73087829	0.82[ASN][1000 genomes]
rs73096595	0.83[AFR][1000 genomes]
rs73098512	0.83[AFR][1000 genomes]
rs73098518	0.83[AFR][1000 genomes]
rs73098527	0.84[AFR][1000 genomes]
rs73098528	0.84[AFR][1000 genomes]
rs73098530	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73098537	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73098540	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098550	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098562	0.92[AFR][1000 genomes]
rs73098567	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098569	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098579	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs874331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220347000	Strong transcription	Dnd41	blood
2	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:220305600-220347600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:220305800-220347000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr1:220306600-220346600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220306600-220348200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:220311200-220343400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:220312200-220347400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:220319000-220341400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:220320400-220341800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:220323800-220348000	Strong transcription	Primary B cells from cord blood	blood
12	chr1:220324000-220347000	Strong transcription	HMEC	breast
13	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:220325400-220343800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:220325400-220347000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:220325400-220356000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:220330200-220345000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
19	chr1:220330800-220343800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:220330800-220344000	Weak transcription	Spleen	Spleen
21	chr1:220330800-220344200	Weak transcription	NHEK	skin
22	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:220331800-220347200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:220331800-220354000	Weak transcription	Right Ventricle	heart
25	chr1:220332200-220347200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:220332200-220352800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:220333000-220348600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:220333200-220350000	Weak transcription	Stomach Mucosa	stomach
29	chr1:220333400-220348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:220334000-220347200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr1:220334200-220344200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:220336400-220347000	Strong transcription	Adipose Nuclei	Adipose
33	chr1:220336400-220347800	Strong transcription	Fetal Thymus	thymus
34	chr1:220337000-220352200	Strong transcription	Fetal Intestine Large	intestine
35	chr1:220337200-220341400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:220337200-220341600	Strong transcription	NHDF-Ad	bronchial
37	chr1:220337200-220346600	Strong transcription	Placenta	Placenta
38	chr1:220337200-220347200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:220337200-220348600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:220337400-220347000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:220337400-220347000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:220337400-220347000	Strong transcription	Liver	Liver
43	chr1:220337400-220347400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr1:220337400-220347800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:220337600-220341400	Strong transcription	Osteobl	bone
46	chr1:220337600-220346600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr1:220337800-220347200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:220338000-220346800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:220338000-220347200	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:220338200-220347000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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