Variant report

Variant	rs59935950
Chromosome Location	chr1:220353244-220353245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1039206	0.81[AFR][1000 genomes]
rs11118501	0.83[ASN][1000 genomes]
rs1124763	0.81[AFR][1000 genomes]
rs12022336	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12025326	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12025702	0.83[ASN][1000 genomes]
rs12026270	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12031256	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12032536	0.83[ASN][1000 genomes]
rs12032738	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12033612	0.83[ASN][1000 genomes]
rs12037712	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12039349	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12043920	0.83[ASN][1000 genomes]
rs12045447	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17007139	0.81[AFR][1000 genomes]
rs3820455	0.81[AFR][1000 genomes]
rs56357312	0.83[ASN][1000 genomes]
rs58966246	0.82[AFR][1000 genomes]
rs73096595	0.81[AFR][1000 genomes]
rs73098512	0.81[AFR][1000 genomes]
rs73098518	0.81[AFR][1000 genomes]
rs73098527	0.82[AFR][1000 genomes]
rs73098528	0.82[AFR][1000 genomes]
rs73098530	0.82[AFR][1000 genomes]
rs73098537	0.80[AFR][1000 genomes]
rs73098540	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098550	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098551	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098553	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098562	0.86[AFR][1000 genomes]
rs73098567	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73098569	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73098579	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs874331	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:220325400-220356000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
5	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:220331800-220354000	Weak transcription	Right Ventricle	heart
7	chr1:220341000-220353800	Weak transcription	Psoas Muscle	Psoas
8	chr1:220341000-220361000	Weak transcription	Small Intestine	intestine
9	chr1:220341200-220364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:220341200-220369200	Weak transcription	Fetal Heart	heart
11	chr1:220343800-220357200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:220344800-220365600	Weak transcription	Brain Substantia Nigra	brain
13	chr1:220345200-220361200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:220345400-220354000	Weak transcription	Brain Anterior Caudate	brain
15	chr1:220345400-220354000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:220345400-220354000	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:220345400-220354400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:220345400-220361800	Weak transcription	Colonic Mucosa	Colon
19	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:220345600-220361400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr1:220346400-220354000	Weak transcription	Osteobl	bone
22	chr1:220346600-220353800	Weak transcription	A549	lung
23	chr1:220346600-220354000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:220346600-220354000	Weak transcription	NHDF-Ad	bronchial
25	chr1:220346600-220358000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:220346600-220360800	Weak transcription	Fetal Kidney	kidney
27	chr1:220346600-220363600	Weak transcription	Brain Angular Gyrus	brain
28	chr1:220347000-220354400	Weak transcription	HMEC	breast
29	chr1:220347200-220353800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr1:220347200-220354000	Weak transcription	NH-A	brain
31	chr1:220347200-220355600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:220348000-220357800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:220348200-220356400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr1:220349600-220356800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:220349600-220369600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr1:220349800-220356400	Strong transcription	Fetal Lung	lung
38	chr1:220349800-220357000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:220349800-220357000	Strong transcription	Liver	Liver
40	chr1:220349800-220357200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:220349800-220359600	Strong transcription	Primary B cells from cord blood	blood
42	chr1:220349800-220362600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:220350000-220356400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:220350000-220357200	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr1:220350200-220354200	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:220350200-220359400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr1:220350200-220360600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr1:220350400-220353800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:220350400-220354600	Weak transcription	Gastric	stomach

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