Variant report

Variant	rs12025702
Chromosome Location	chr1:220377430-220377431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:220377104-220377540	HL-60	blood:	n/a	chr1:220377349-220377362 chr1:220377350-220377359 chr1:220377170-220377183 chr1:220377348-220377361
2	SPI1	chr1:220377073-220377617	HL-60	blood:	n/a	chr1:220377349-220377362 chr1:220377350-220377359 chr1:220377170-220377183 chr1:220377348-220377361
3	SPI1	chr1:220377260-220377432	K562	blood:	n/a	chr1:220377349-220377362 chr1:220377350-220377359 chr1:220377348-220377361
4	SPI1	chr1:220377231-220377430	K562	blood:	n/a	chr1:220377349-220377362 chr1:220377350-220377359 chr1:220377348-220377361
5	STAT3	chr1:220377342-220377671	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000270585	TF binding region
SNORA36B	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10127631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779401	0.83[EUR][1000 genomes]
rs10863539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863540	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118506	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118510	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118513	0.83[EUR][1000 genomes]
rs11586671	0.83[EUR][1000 genomes]
rs12022336	1.00[ASN][1000 genomes]
rs12025326	1.00[ASN][1000 genomes]
rs12026270	1.00[ASN][1000 genomes]
rs12030504	0.91[ASN][1000 genomes]
rs12031256	0.91[ASN][1000 genomes]
rs12032536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12033612	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037712	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs12039349	1.00[ASN][1000 genomes]
rs12040095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12043920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12045447	0.91[ASN][1000 genomes]
rs12086105	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12086760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28650887	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56357312	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59935950	0.83[ASN][1000 genomes]
rs6690426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6703091	0.83[EUR][1000 genomes]
rs73087829	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73095623	0.83[EUR][1000 genomes]
rs73095636	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73098540	0.91[ASN][1000 genomes]
rs73098550	0.91[ASN][1000 genomes]
rs73098551	0.91[ASN][1000 genomes]
rs73098553	0.91[ASN][1000 genomes]
rs73098567	0.91[ASN][1000 genomes]
rs73098569	1.00[ASN][1000 genomes]
rs73098579	1.00[ASN][1000 genomes]
rs874331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:220350600-220387800	Weak transcription	Stomach Mucosa	stomach
7	chr1:220350800-220378800	Weak transcription	Pancreas	Pancrea
8	chr1:220353200-220386600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:220353800-220386400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:220354400-220386800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:220355400-220378600	Weak transcription	Gastric	stomach
12	chr1:220358000-220381600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:220358000-220382000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:220358400-220377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:220358600-220385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:220359000-220385000	Strong transcription	Liver	Liver
17	chr1:220359200-220386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:220359400-220385800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:220359400-220386800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:220359600-220378400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:220362800-220378600	Weak transcription	Small Intestine	intestine
22	chr1:220366000-220378600	Weak transcription	Spleen	Spleen
23	chr1:220366200-220378200	Weak transcription	A549	lung
24	chr1:220366200-220378600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:220366200-220392000	Weak transcription	Brain Angular Gyrus	brain
26	chr1:220366400-220378600	Weak transcription	Brain Substantia Nigra	brain
27	chr1:220366400-220379800	Weak transcription	Esophagus	oesophagus
28	chr1:220366600-220378400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:220366600-220378400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr1:220366600-220378400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:220366600-220378400	Weak transcription	Hela-S3	cervix
32	chr1:220366600-220378600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:220366800-220378400	Weak transcription	Colonic Mucosa	Colon
34	chr1:220366800-220378400	Weak transcription	HepG2	liver
35	chr1:220367000-220378600	Weak transcription	NHLF	lung
36	chr1:220368600-220378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:220368600-220378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr1:220368600-220378400	Weak transcription	HSMMtube	muscle
39	chr1:220368600-220383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:220370000-220385200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:220370800-220380400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:220371000-220380400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:220371000-220380600	Strong transcription	Placenta	Placenta
44	chr1:220371400-220385400	Strong transcription	Adipose Nuclei	Adipose
45	chr1:220372000-220381400	Strong transcription	Fetal Thymus	thymus
46	chr1:220372600-220381200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:220372600-220386200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:220373200-220384800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr1:220373200-220392400	Weak transcription	Fetal Brain Female	brain
50	chr1:220373400-220378600	Weak transcription	Psoas Muscle	Psoas

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