Variant report
| Variant | rs60682988 |
|---|---|
| Chromosome Location | chr8:91727848-91727849 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NECAB1-2 | chr8:91727845-91728037 | ucscGeneNc_uc003yep_2 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180694 | Chromatin interaction |
| ENSG00000246792 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12115158 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16905221 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28419185 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56902364 | 1.00[AMR][1000 genomes] |
| rs57151141 | 0.84[AFR][1000 genomes] |
| rs57970843 | 1.00[AMR][1000 genomes] |
| rs58961683 | 1.00[AMR][1000 genomes] |
| rs59321648 | 1.00[AMR][1000 genomes] |
| rs61113057 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73692827 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73692833 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73692836 | 1.00[AMR][1000 genomes] |
| rs73692837 | 1.00[AMR][1000 genomes] |
| rs73694537 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694546 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694547 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7833398 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv972561 | chr8:91715099-91733312 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034104 | chr8:91723213-91847147 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv539673 | chr8:91723213-91847147 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
