Variant report

Variant	rs7833398
Chromosome Location	chr8:91714317-91714318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91713317..91715719-chr8:91719362..91722229,2	K562	blood:
2	chr8:91656776..91658414-chr8:91713603..91716187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10092300	1.00[MEX][hapmap]
rs10096820	1.00[MEX][hapmap]
rs10098726	1.00[MEX][hapmap]
rs12115158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904906	1.00[MEX][hapmap]
rs16904993	1.00[MEX][hapmap]
rs16904995	1.00[MEX][hapmap]
rs16905037	1.00[MEX][hapmap]
rs16905175	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs16905221	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28419185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56902364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57151141	0.95[AFR][1000 genomes]
rs57970843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58961683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59321648	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60682988	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61113057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692833	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694550	0.90[AFR][1000 genomes]
rs9297878	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91698800-91721200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:91711000-91714800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:91711200-91714600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:91711200-91715000	Enhancers	Adipose Nuclei	Adipose
5	chr8:91711400-91715000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:91711400-91715000	Enhancers	HMEC	breast
7	chr8:91711400-91715000	Enhancers	NHEK	skin
8	chr8:91711800-91714800	Enhancers	NHDF-Ad	bronchial
9	chr8:91712200-91714600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:91712200-91715000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:91712400-91714600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:91712600-91714600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:91712600-91714600	Enhancers	NHLF	lung
14	chr8:91712800-91715000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:91712800-91715200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:91713000-91714400	Enhancers	Hela-S3	cervix
17	chr8:91713200-91715000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:91713200-91715000	Enhancers	Ovary	ovary
19	chr8:91713800-91722000	Weak transcription	Brain Angular Gyrus	brain
20	chr8:91714200-91714600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:91714200-91715200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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