Variant report

Variant	rs16904906
Chromosome Location	chr8:91588334-91588335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91586951..91591432-chr8:91656063..91661127,8	MCF-7	breast:
2	chr8:91569217..91570978-chr8:91587022..91589931,2	MCF-7	breast:
3	chr8:91565327..91567860-chr8:91586497..91589289,2	MCF-7	breast:
4	chr8:91584429..91589445-chr8:91589711..91593163,5	K562	blood:

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10046720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10086275	0.84[AMR][1000 genomes]
rs10092300	1.00[MEX][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes]
rs10092582	0.84[AMR][1000 genomes]
rs10093669	0.84[AMR][1000 genomes]
rs10094321	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095430	0.84[AMR][1000 genomes]
rs10096820	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs10098293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098726	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101828	0.84[AMR][1000 genomes]
rs10101918	0.84[AMR][1000 genomes]
rs10103494	0.84[AMR][1000 genomes]
rs10103796	0.84[AMR][1000 genomes]
rs10105322	0.84[AMR][1000 genomes]
rs10106913	0.84[AMR][1000 genomes]
rs10111672	0.84[AMR][1000 genomes]
rs10113048	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283082	0.84[AMR][1000 genomes]
rs10283102	0.84[AMR][1000 genomes]
rs10504896	0.84[AMR][1000 genomes]
rs16904915	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904920	0.91[AMR][1000 genomes]
rs16904993	1.00[MEX][hapmap]
rs16904995	1.00[MEX][hapmap]
rs16905034	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905035	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905036	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905037	1.00[MEX][hapmap]
rs16905221	1.00[MEX][hapmap]
rs28457745	0.84[AMR][1000 genomes]
rs28489185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525018	0.84[AMR][1000 genomes]
rs28529000	0.84[AMR][1000 genomes]
rs28552751	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28555480	0.91[AMR][1000 genomes]
rs28557468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28604570	0.91[AMR][1000 genomes]
rs28620201	0.84[AMR][1000 genomes]
rs28623085	0.84[AMR][1000 genomes]
rs28624189	0.84[AMR][1000 genomes]
rs28631038	0.84[AMR][1000 genomes]
rs28644172	0.84[AMR][1000 genomes]
rs28654367	0.84[AMR][1000 genomes]
rs28669236	0.84[AMR][1000 genomes]
rs28680836	0.84[AMR][1000 genomes]
rs28690036	0.84[AMR][1000 genomes]
rs28712771	0.84[AMR][1000 genomes]
rs56021347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56061891	0.84[AMR][1000 genomes]
rs56187777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692315	0.84[AMR][1000 genomes]
rs73692316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692438	0.84[AMR][1000 genomes]
rs73692439	0.84[AMR][1000 genomes]
rs73692448	0.84[AMR][1000 genomes]
rs73692449	0.84[AMR][1000 genomes]
rs73692450	0.84[AMR][1000 genomes]
rs73692452	0.84[AMR][1000 genomes]
rs73692453	0.84[AMR][1000 genomes]
rs73692470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692600	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73692602	0.84[AMR][1000 genomes]
rs73694003	0.84[AMR][1000 genomes]
rs73694004	0.84[AMR][1000 genomes]
rs73694005	0.84[AMR][1000 genomes]
rs7833398	1.00[MEX][hapmap]
rs9297873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297878	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91585200-91588600	Enhancers	Fetal Heart	heart
2	chr8:91585600-91590800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:91585800-91591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91586000-91590600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:91586600-91590600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:91586600-91591000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:91586800-91588600	Enhancers	Liver	Liver
8	chr8:91587000-91588400	Enhancers	K562	blood
9	chr8:91587000-91590800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:91587400-91588600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:91587400-91590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:91587600-91588400	Enhancers	HSMMtube	muscle
13	chr8:91587600-91588600	Enhancers	Fetal Muscle Leg	muscle
14	chr8:91587800-91588400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:91587800-91588400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:91587800-91588400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:91587800-91588400	Enhancers	Placenta	Placenta
18	chr8:91587800-91588600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:91588000-91588400	Enhancers	Stomach Mucosa	stomach
20	chr8:91588000-91591400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:91588200-91589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:91588200-91592600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:91588200-91592600	Weak transcription	HSMM	muscle

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