Variant report

Variant	rs10095430
Chromosome Location	chr8:91605181-91605182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91594458..91596595-chr8:91604272..91606928,3	MCF-7	breast:
2	chr8:91604199..91608831-chr8:91656344..91658872,6	MCF-7	breast:
3	chr8:91596652..91598332-chr8:91603771..91606248,2	K562	blood:
4	chr8:91601757..91606982-chr8:91655744..91659246,4	MCF-7	breast:
5	chr8:91595036..91598332-chr8:91602529..91606248,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM64-1	chr8:91604969-91605331	XLOC_007150
2	lnc-TMEM64-1	chr8:91604969-91605331	XLOC_007150
3	lnc-TMEM64-1	chr8:91605032-91605331	ENSG00000253799.1
4	lnc-TMEM64-1	chr8:91605003-91605331	NR_104062

No data

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10046720	0.84[AMR][1000 genomes]
rs10086275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10087211	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10092300	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10093669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094321	0.84[AMR][1000 genomes]
rs10096820	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098293	0.84[AMR][1000 genomes]
rs10098726	0.84[AMR][1000 genomes]
rs10101828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105322	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111672	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10113048	0.84[AMR][1000 genomes]
rs10282840	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10283082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10504896	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904906	0.84[AMR][1000 genomes]
rs16904915	0.84[AMR][1000 genomes]
rs16905034	0.84[AMR][1000 genomes]
rs16905035	0.84[AMR][1000 genomes]
rs16905036	0.84[AMR][1000 genomes]
rs28457745	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489185	0.84[AMR][1000 genomes]
rs28495879	0.84[AMR][1000 genomes]
rs28525018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529000	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552751	0.84[AMR][1000 genomes]
rs28557468	0.84[AMR][1000 genomes]
rs28620201	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623085	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624189	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631038	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28669236	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28680836	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709775	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28712771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021347	0.84[AMR][1000 genomes]
rs56061891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56187777	0.84[AMR][1000 genomes]
rs73692314	0.84[AMR][1000 genomes]
rs73692315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692316	0.84[AMR][1000 genomes]
rs73692438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692448	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692453	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692470	0.84[AMR][1000 genomes]
rs73692595	0.84[AMR][1000 genomes]
rs73692598	0.84[AMR][1000 genomes]
rs73692602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297873	0.84[AMR][1000 genomes]
rs9297878	0.84[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91597600-91606400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:91597800-91605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:91603200-91605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:91603200-91605600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:91605000-91605200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links