Variant report

Variant	rs73694003
Chromosome Location	chr8:91606166-91606167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91594458..91596595-chr8:91604272..91606928,3	MCF-7	breast:
2	chr8:91604199..91608831-chr8:91656344..91658872,6	MCF-7	breast:
3	chr8:91605734..91608426-chr8:91612551..91614640,3	MCF-7	breast:
4	chr8:91601371..91603552-chr8:91605415..91607514,2	K562	blood:
5	chr8:91605465..91608081-chr8:91613151..91614817,3	MCF-7	breast:
6	chr8:91596652..91598332-chr8:91603771..91606248,2	K562	blood:
7	chr8:91601757..91606982-chr8:91655744..91659246,4	MCF-7	breast:
8	chr8:91595036..91598332-chr8:91602529..91606248,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM64-1	chr8:91606060-91606199	XLOC_007150
2	lnc-TMEM64-1	chr8:91606060-91606199	XLOC_007150
3	lnc-TMEM64-1	chr8:91606060-91606199	ENSG00000253799.1
4	lnc-TMEM64-1	chr8:91606060-91606199	NR_104062

No data

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10046720	0.84[AMR][1000 genomes]
rs10086275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10087211	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10092300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092582	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10093669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094321	0.84[AMR][1000 genomes]
rs10095430	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098293	0.84[AMR][1000 genomes]
rs10098726	0.84[AMR][1000 genomes]
rs10101828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10113048	0.84[AMR][1000 genomes]
rs10282840	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10283082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10504896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904906	0.84[AMR][1000 genomes]
rs16904915	0.84[AMR][1000 genomes]
rs16905034	0.84[AMR][1000 genomes]
rs16905035	0.84[AMR][1000 genomes]
rs16905036	0.84[AMR][1000 genomes]
rs28457745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489185	0.84[AMR][1000 genomes]
rs28495879	0.84[AMR][1000 genomes]
rs28525018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552751	0.84[AMR][1000 genomes]
rs28557468	0.84[AMR][1000 genomes]
rs28620201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28669236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28680836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709775	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28712771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021347	0.84[AMR][1000 genomes]
rs56061891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56187777	0.84[AMR][1000 genomes]
rs73692314	0.84[AMR][1000 genomes]
rs73692315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692316	0.84[AMR][1000 genomes]
rs73692438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692470	0.84[AMR][1000 genomes]
rs73692595	0.84[AMR][1000 genomes]
rs73692598	0.84[AMR][1000 genomes]
rs73692602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs756570	0.80[AFR][1000 genomes]
rs9297873	0.84[AMR][1000 genomes]
rs9297878	0.84[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91597600-91606400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:91605200-91606600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:91605400-91606200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:91605400-91606200	Enhancers	HMEC	breast
6	chr8:91605400-91606600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:91605800-91606400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr8:91605800-91606600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:91605800-91606600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:91606000-91606600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:91606000-91606600	Enhancers	Brain Cingulate Gyrus	brain
12	chr8:91606000-91606800	Enhancers	Cortex derived primary cultured neurospheres	brain

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