Variant report

Variant	rs10504896
Chromosome Location	chr8:91606565-91606566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91594458..91596595-chr8:91604272..91606928,3	MCF-7	breast:
2	chr8:91604199..91608831-chr8:91656344..91658872,6	MCF-7	breast:
3	chr8:91605734..91608426-chr8:91612551..91614640,3	MCF-7	breast:
4	chr8:91601371..91603552-chr8:91605415..91607514,2	K562	blood:
5	chr8:91605465..91608081-chr8:91613151..91614817,3	MCF-7	breast:
6	chr8:91601757..91606982-chr8:91655744..91659246,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10046720	0.84[AMR][1000 genomes]
rs10086275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10087211	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10092300	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092582	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10093669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094321	0.84[AMR][1000 genomes]
rs10095430	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096820	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098293	0.84[AMR][1000 genomes]
rs10098726	0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs10101828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105322	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10113048	0.84[AMR][1000 genomes]
rs10282840	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10283082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904906	0.84[AMR][1000 genomes]
rs16904915	0.84[AMR][1000 genomes]
rs16905034	0.84[AMR][1000 genomes]
rs16905035	0.84[AMR][1000 genomes]
rs16905036	0.84[AMR][1000 genomes]
rs28457745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489185	0.84[AMR][1000 genomes]
rs28495879	0.84[AMR][1000 genomes]
rs28525018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552751	0.84[AMR][1000 genomes]
rs28557468	0.84[AMR][1000 genomes]
rs28620201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28669236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28680836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709775	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28712771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021347	0.84[AMR][1000 genomes]
rs56061891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56187777	0.84[AMR][1000 genomes]
rs73692314	0.84[AMR][1000 genomes]
rs73692315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692316	0.84[AMR][1000 genomes]
rs73692438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692470	0.84[AMR][1000 genomes]
rs73692595	0.84[AMR][1000 genomes]
rs73692598	0.84[AMR][1000 genomes]
rs73692602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs756570	0.80[AFR][1000 genomes]
rs9297873	0.84[AMR][1000 genomes]
rs9297878	0.83[YRI][hapmap];0.84[AMR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91605200-91606600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:91605400-91606600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:91605800-91606600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:91605800-91606600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:91606000-91606600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:91606000-91606600	Enhancers	Brain Cingulate Gyrus	brain
8	chr8:91606000-91606800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:91606200-91606800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:91606200-91607800	Enhancers	Brain Germinal Matrix	brain
11	chr8:91606200-91609200	Weak transcription	HMEC	breast
12	chr8:91606400-91606600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:91606400-91606600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr8:91606400-91606800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:91606400-91606800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links