Variant report

Variant	rs16904915
Chromosome Location	chr8:91594091-91594092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91013422..91014559-chr8:91593445..91594257,3	MCF-7	breast:
2	chr8:91593640..91594279-chr8:91924795..91925446,2	MCF-7	breast:
3	chr8:91591227..91594371-chr8:91655666..91659242,4	K562	blood:
4	chr8:91594033..91595914-chr8:91702199..91704842,2	MCF-7	breast:
5	chr8:91013422..91014409-chr8:91593445..91594257,2	MCF-7	breast:
6	chr8:91592321..91595028-chr8:91900855..91903114,2	MCF-7	breast:
7	chr8:91593180..91595873-chr8:91597384..91599747,2	MCF-7	breast:
8	chr8:90994808..90997862-chr8:91591605..91594200,3	K562	blood:
9	chr8:91593469..91595220-chr8:91599525..91601715,2	K562	blood:
10	chr8:91592182..91594210-chr8:91594648..91596923,2	K562	blood:
11	chr8:91591742..91600378-chr8:91654152..91660927,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction
ENSG00000180694	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10046720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10086275	0.84[AMR][1000 genomes]
rs10092300	0.82[YRI][hapmap];0.84[AMR][1000 genomes]
rs10092582	0.84[AMR][1000 genomes]
rs10093669	0.84[AMR][1000 genomes]
rs10094321	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095430	0.84[AMR][1000 genomes]
rs10096820	0.84[AMR][1000 genomes]
rs10098293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098726	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101828	0.84[AMR][1000 genomes]
rs10101918	0.84[AMR][1000 genomes]
rs10103494	0.84[AMR][1000 genomes]
rs10103796	0.84[AMR][1000 genomes]
rs10105322	0.84[AMR][1000 genomes]
rs10106913	0.84[AMR][1000 genomes]
rs10111672	0.84[AMR][1000 genomes]
rs10113048	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283082	0.84[AMR][1000 genomes]
rs10283102	0.84[AMR][1000 genomes]
rs10504896	0.84[AMR][1000 genomes]
rs16904906	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904920	0.91[AMR][1000 genomes]
rs16905034	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905035	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905036	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28457745	0.84[AMR][1000 genomes]
rs28489185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525018	0.84[AMR][1000 genomes]
rs28529000	0.84[AMR][1000 genomes]
rs28552751	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28555480	0.91[AMR][1000 genomes]
rs28557468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28604570	0.91[AMR][1000 genomes]
rs28620201	0.84[AMR][1000 genomes]
rs28623085	0.84[AMR][1000 genomes]
rs28624189	0.84[AMR][1000 genomes]
rs28631038	0.84[AMR][1000 genomes]
rs28644172	0.84[AMR][1000 genomes]
rs28654367	0.84[AMR][1000 genomes]
rs28669236	0.84[AMR][1000 genomes]
rs28680836	0.84[AMR][1000 genomes]
rs28690036	0.84[AMR][1000 genomes]
rs28712771	0.84[AMR][1000 genomes]
rs56021347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56061891	0.84[AMR][1000 genomes]
rs56187777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692315	0.84[AMR][1000 genomes]
rs73692316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692438	0.84[AMR][1000 genomes]
rs73692439	0.84[AMR][1000 genomes]
rs73692448	0.84[AMR][1000 genomes]
rs73692449	0.84[AMR][1000 genomes]
rs73692450	0.84[AMR][1000 genomes]
rs73692452	0.84[AMR][1000 genomes]
rs73692453	0.84[AMR][1000 genomes]
rs73692470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692600	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73692602	0.84[AMR][1000 genomes]
rs73694003	0.84[AMR][1000 genomes]
rs73694004	0.84[AMR][1000 genomes]
rs73694005	0.84[AMR][1000 genomes]
rs9297873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297878	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91590600-91597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:91591400-91594400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:91591400-91594800	Enhancers	Fetal Heart	heart
4	chr8:91593000-91594600	Enhancers	K562	blood
5	chr8:91593200-91596800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:91593400-91594800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:91593600-91595600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:91593600-91595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:91593800-91594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:91593800-91594800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:91593800-91596600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:91593800-91597000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:91594000-91597400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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