Variant report

Variant	rs60683533
Chromosome Location	chr15:44787704-44787705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2303576	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2412908	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2950622	1.00[AFR][1000 genomes]
rs57400480	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59381371	0.81[ASN][1000 genomes]
rs60337896	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
7	nsv904180	chr15:44783700-44820054	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44740600-44795600	Weak transcription	Esophagus	oesophagus
3	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
5	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:44751000-44795400	Weak transcription	Stomach Mucosa	stomach
7	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
8	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:44761600-44789800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:44773400-44791800	Weak transcription	Right Atrium	heart
11	chr15:44774000-44800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:44775800-44820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:44776000-44793200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:44776200-44792200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:44776200-44792600	Strong transcription	Fetal Thymus	thymus
16	chr15:44776200-44793400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:44776200-44801400	Strong transcription	Dnd41	blood
18	chr15:44776400-44791800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:44776600-44793000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:44776600-44793400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:44776600-44793600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:44777000-44789200	Weak transcription	Colonic Mucosa	Colon
23	chr15:44777000-44792800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:44777200-44803800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:44777600-44801800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:44778000-44827800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:44778000-44827800	Weak transcription	Psoas Muscle	Psoas
28	chr15:44779000-44791800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:44779800-44787800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:44779800-44787800	Weak transcription	Spleen	Spleen
31	chr15:44779800-44788800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:44779800-44795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:44779800-44813600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:44779800-44824200	Weak transcription	Gastric	stomach
35	chr15:44779800-44827800	Weak transcription	Aorta	Aorta
36	chr15:44780000-44788600	Weak transcription	Brain Anterior Caudate	brain
37	chr15:44780000-44789800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:44780000-44790000	Weak transcription	Fetal Brain Male	brain
39	chr15:44780000-44792600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:44780400-44789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:44780600-44787800	Weak transcription	GM12878-XiMat	blood
42	chr15:44780600-44795400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:44781800-44792200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:44782000-44787800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:44782000-44788000	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:44782000-44795600	Weak transcription	Brain Substantia Nigra	brain
47	chr15:44782000-44796600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:44782200-44788000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:44782600-44794800	Weak transcription	A549	lung
50	chr15:44782800-44795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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