Variant report

Variant	rs60684036
Chromosome Location	chr7:140675645-140675646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17161798	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56669525	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56793273	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57627583	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497970	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497975	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497992	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739309	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877730	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1797438	chr7:140666808-140682332	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv520944	chr7:140673779-140679684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140674000-140675800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:140675400-140676400	Enhancers	Adipose Nuclei	Adipose
3	chr7:140675400-140676400	Flanking Active TSS	HepG2	liver
4	chr7:140675400-140677800	Enhancers	Fetal Intestine Large	intestine
5	chr7:140675400-140677800	Enhancers	Fetal Intestine Small	intestine
6	chr7:140675600-140675800	Enhancers	Liver	Liver
7	chr7:140675600-140676400	Enhancers	Duodenum Mucosa	Duodenum
8	chr7:140675600-140676400	Enhancers	Placenta	Placenta
9	chr7:140675600-140676400	Enhancers	Gastric	stomach
10	chr7:140675600-140676600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:140675600-140676800	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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