Variant report

Variant	rs877730
Chromosome Location	chr7:140688990-140688991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10240888	0.82[AFR][1000 genomes]
rs13438609	0.80[AFR][1000 genomes]
rs17161798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56669525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56793273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57627583	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60684036	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62485451	0.83[AFR][1000 genomes]
rs73497970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497992	1.00[EUR][1000 genomes]
rs73739309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140687400-140691400	Enhancers	Fetal Intestine Small	intestine
2	chr7:140688400-140689200	Enhancers	Liver	Liver
3	chr7:140688400-140691200	Enhancers	Fetal Intestine Large	intestine
4	chr7:140688600-140689000	Enhancers	Stomach Mucosa	stomach
5	chr7:140688600-140689200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:140688600-140689200	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:140688600-140689200	Enhancers	Pancreas	Pancrea
8	chr7:140688800-140689200	Flanking Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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