Variant report

Variant	rs60686589
Chromosome Location	chr22:32468695-32468696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32053085-32061138..22:32467025-32475239	Hela-S3	cervix:
2	chr22:32466679..32469003-chr7:75933258..75935008,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs33968460	1.00[AMR][1000 genomes]
rs55788758	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56131484	1.00[AMR][1000 genomes]
rs57518663	1.00[AMR][1000 genomes]
rs60666969	1.00[AMR][1000 genomes]
rs61029609	1.00[AMR][1000 genomes]
rs61186856	1.00[AMR][1000 genomes]
rs61699774	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881605	1.00[AMR][1000 genomes]
rs73881606	1.00[AMR][1000 genomes]
rs73881608	1.00[AMR][1000 genomes]
rs73881613	1.00[AMR][1000 genomes]
rs73884237	1.00[AMR][1000 genomes]
rs73884242	1.00[AMR][1000 genomes]
rs73884243	1.00[AMR][1000 genomes]
rs73884247	1.00[AMR][1000 genomes]
rs73884248	1.00[AMR][1000 genomes]
rs73884251	1.00[AMR][1000 genomes]
rs73884253	1.00[AMR][1000 genomes]
rs73884254	1.00[AMR][1000 genomes]
rs73884263	1.00[AMR][1000 genomes]
rs73884268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73884269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055450	chr22:32356150-32468832	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1060529	chr22:32370432-32525699	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	esv1803811	chr22:32441022-32509431	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32442200-32469200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr22:32457800-32469400	Weak transcription	Right Ventricle	heart
3	chr22:32460400-32476000	Weak transcription	Pancreas	Pancrea
4	chr22:32463000-32472000	Weak transcription	Right Atrium	heart
5	chr22:32463400-32469400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr22:32463800-32472000	Weak transcription	Colonic Mucosa	Colon
7	chr22:32467800-32469400	Weak transcription	Left Ventricle	heart
8	chr22:32468000-32469400	Strong transcription	Fetal Heart	heart
9	chr22:32468200-32469600	Enhancers	Fetal Intestine Small	intestine
10	chr22:32468400-32469200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr22:32468400-32469400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr22:32468400-32476600	Enhancers	Fetal Intestine Large	intestine

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