Variant report

Variant	rs73884269
Chromosome Location	chr22:32460651-32460652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32449818..32451630-chr22:32460465..32462874,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs33968460	1.00[AMR][1000 genomes]
rs55788758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56131484	1.00[AMR][1000 genomes]
rs57518663	1.00[AMR][1000 genomes]
rs60666969	1.00[AMR][1000 genomes]
rs60686589	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61029609	1.00[AMR][1000 genomes]
rs61186856	1.00[AMR][1000 genomes]
rs61699774	1.00[AMR][1000 genomes]
rs73881605	1.00[AMR][1000 genomes]
rs73881606	1.00[AMR][1000 genomes]
rs73881608	1.00[AMR][1000 genomes]
rs73881613	1.00[AMR][1000 genomes]
rs73884237	1.00[AMR][1000 genomes]
rs73884242	1.00[AMR][1000 genomes]
rs73884243	1.00[AMR][1000 genomes]
rs73884247	1.00[AMR][1000 genomes]
rs73884248	1.00[AMR][1000 genomes]
rs73884251	1.00[AMR][1000 genomes]
rs73884253	1.00[AMR][1000 genomes]
rs73884254	1.00[AMR][1000 genomes]
rs73884263	1.00[AMR][1000 genomes]
rs73884268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055450	chr22:32356150-32468832	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1063876	chr22:32358540-32463271	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1061546	chr22:32358991-32464350	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1059240	chr22:32362689-32462511	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv544678	chr22:32362689-32462511	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1060529	chr22:32370432-32525699	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1063267	chr22:32379851-32462650	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv544679	chr22:32379851-32462650	Weak transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	esv1803811	chr22:32441022-32509431	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32442200-32468400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32442200-32469200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr22:32457800-32469400	Weak transcription	Right Ventricle	heart
4	chr22:32458400-32462800	Enhancers	Fetal Intestine Large	intestine
5	chr22:32458800-32461800	Enhancers	Duodenum Mucosa	Duodenum
6	chr22:32459200-32462400	Weak transcription	Right Atrium	heart
7	chr22:32459400-32462400	Weak transcription	Left Ventricle	heart
8	chr22:32459600-32463200	Enhancers	Fetal Heart	heart
9	chr22:32460000-32467000	Genic enhancers	Fetal Intestine Small	intestine
10	chr22:32460400-32461200	Enhancers	Small Intestine	intestine
11	chr22:32460400-32476000	Weak transcription	Pancreas	Pancrea
12	chr22:32460600-32461200	Enhancers	Duodenum Smooth Muscle	Duodenum

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