Variant report

Variant	rs60689150
Chromosome Location	chr5:90314241-90314242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90314128..90316238-chr5:90320139..90322345,2	K562	blood:
2	chr5:90313237..90315031-chr5:90316021..90318044,2	K562	blood:
3	chr5:90312914..90314737-chr5:90316544..90319036,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2973444	1.00[ASN][1000 genomes]
rs73187140	0.83[AMR][1000 genomes]
rs73187144	0.83[AMR][1000 genomes]
rs73187188	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189003	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90308600-90318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:90308800-90316000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:90309800-90323200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:90312800-90314400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:90312800-90315000	Enhancers	Fetal Intestine Small	intestine
6	chr5:90313000-90314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:90313200-90314800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:90313200-90315200	Enhancers	Fetal Lung	lung
9	chr5:90313200-90315400	Enhancers	Colon Smooth Muscle	Colon
10	chr5:90313200-90315400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr5:90313200-90318200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:90313400-90314800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:90313400-90314800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr5:90313400-90315400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:90313400-90318400	Weak transcription	A549	lung
16	chr5:90313400-90321600	Weak transcription	Liver	Liver
17	chr5:90313600-90314400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:90313600-90314800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:90313600-90321400	Weak transcription	Small Intestine	intestine
20	chr5:90313800-90320000	Weak transcription	Adipose Nuclei	Adipose
21	chr5:90314000-90314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:90314000-90314400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:90314000-90314800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:90314000-90314800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:90314000-90319200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:90314200-90314400	Enhancers	Rectal Smooth Muscle	rectum
27	chr5:90314200-90314800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:90314200-90314800	Weak transcription	Psoas Muscle	Psoas
29	chr5:90314200-90315200	Enhancers	Stomach Mucosa	stomach
30	chr5:90314200-90316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:90314200-90319800	Weak transcription	Fetal Stomach	stomach
32	chr5:90314200-90320800	Weak transcription	Fetal Intestine Large	intestine

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