Variant report

Variant	rs73187144
Chromosome Location	chr5:90324595-90324596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90322563..90325086-chr5:90674731..90677361,2	K562	blood:
2	chr5:90316078..90318522-chr5:90323384..90326123,2	K562	blood:
3	chr5:90319204..90321360-chr5:90324134..90326175,2	K562	blood:
4	chr5:90322115..90324122-chr5:90324503..90326685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16869403	0.91[ASN][1000 genomes]
rs1876635	0.92[ASN][1000 genomes]
rs60689150	0.83[AMR][1000 genomes]
rs61392689	0.84[EUR][1000 genomes]
rs66608099	0.91[ASN][1000 genomes]
rs73187140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187190	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90314800-90327000	Weak transcription	Gastric	stomach
2	chr5:90317000-90325000	Enhancers	Colon Smooth Muscle	Colon
3	chr5:90317600-90324600	Enhancers	Stomach Mucosa	stomach
4	chr5:90319400-90324600	Enhancers	Fetal Lung	lung
5	chr5:90320800-90326800	Weak transcription	NHEK	skin
6	chr5:90321600-90325000	Enhancers	Liver	Liver
7	chr5:90322200-90327400	Enhancers	A549	lung
8	chr5:90322400-90324800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:90322600-90325000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:90323000-90324600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:90323000-90324600	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:90323200-90324600	Enhancers	Small Intestine	intestine
13	chr5:90323200-90324800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr5:90323200-90324800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:90323200-90325000	Enhancers	Fetal Intestine Large	intestine
16	chr5:90323200-90325000	Enhancers	Fetal Intestine Small	intestine
17	chr5:90323400-90326600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:90323600-90325000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:90323600-90327000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:90323600-90330400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:90323600-90332800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:90323800-90324800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr5:90323800-90324800	Enhancers	K562	blood
24	chr5:90324200-90327000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:90324200-90329000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:90324200-90330400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:90324200-90332800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:90324200-90332800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:90324400-90325400	Enhancers	HepG2	liver

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