The 2.0 version of rSNPBase

Variant report

Variant rs60689338
Chromosome Location chr6:25541597-25541598
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25471600-25597200 Weak transcription Gastric stomach
2 chr6:25490400-25543000 Weak transcription Hela-S3 cervix
3 chr6:25494000-25551400 Weak transcription Left Ventricle heart
4 chr6:25509800-25548600 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr6:25514200-25542600 Weak transcription Adipose Nuclei Adipose
6 chr6:25514200-25558400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr6:25514400-25541600 Weak transcription Colonic Mucosa Colon
8 chr6:25516200-25547000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr6:25516200-25556800 Weak transcription Pancreas Pancrea
10 chr6:25516400-25556800 Weak transcription Fetal Stomach stomach
11 chr6:25516600-25544000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr6:25516800-25545200 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr6:25516800-25606400 Weak transcription Lung lung
14 chr6:25517000-25542200 Weak transcription Primary T cells fromperipheralblood blood
15 chr6:25517400-25542200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr6:25519800-25543200 Weak transcription Primary hematopoietic stem cells blood
17 chr6:25519800-25556800 Weak transcription Ovary ovary
18 chr6:25522200-25545400 Weak transcription Small Intestine intestine
19 chr6:25522400-25588600 Weak transcription HMEC breast
20 chr6:25523000-25550600 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr6:25523000-25577200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr6:25523400-25544200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr6:25530800-25584200 Weak transcription Fetal Intestine Small intestine
24 chr6:25535000-25541800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr6:25535200-25542000 Weak transcription Placenta Placenta
26 chr6:25536600-25542000 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr6:25536800-25542200 Weak transcription Brain Cingulate Gyrus brain
28 chr6:25537600-25541600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr6:25537800-25542400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr6:25538000-25541600 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr6:25538000-25544400 Weak transcription Fetal Kidney kidney
32 chr6:25538200-25542000 Strong transcription Fetal Lung lung
33 chr6:25538400-25543400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr6:25538600-25563600 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr6:25538600-25592800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr6:25539000-25542600 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr6:25539000-25561200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr6:25539200-25542600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr6:25539200-25543000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr6:25539200-25582000 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr6:25539600-25556800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr6:25539600-25565200 Weak transcription Aorta Aorta
43 chr6:25539800-25558200 Weak transcription Thymus Thymus
44 chr6:25540000-25541600 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr6:25540000-25541800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr6:25540600-25580200 Weak transcription Fetal Thymus thymus
47 chr6:25540800-25550800 Weak transcription Fetal Intestine Large intestine
48 chr6:25540800-25556800 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr6:25541000-25541600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr6:25541000-25542400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015