Variant report
Variant | rs60691286 |
---|---|
Chromosome Location | chr9:17265788-17265789 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10114324 | 0.90[AFR][1000 genomes] |
rs10756863 | 0.92[AFR][1000 genomes] |
rs10756865 | 0.90[AFR][1000 genomes] |
rs10962917 | 0.82[EUR][1000 genomes] |
rs10962922 | 0.88[AFR][1000 genomes] |
rs10962924 | 0.88[AFR][1000 genomes] |
rs10962925 | 0.89[AFR][1000 genomes] |
rs10962928 | 0.80[AMR][1000 genomes] |
rs10962932 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs10962933 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs10962938 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs10962942 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs10962960 | 0.83[AMR][1000 genomes] |
rs10962961 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10962962 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10962963 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10962964 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10962965 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10962985 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs10962986 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs10962987 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs10962989 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs10963011 | 0.87[AFR][1000 genomes] |
rs10963012 | 0.90[AFR][1000 genomes] |
rs1113382 | 0.89[AFR][1000 genomes] |
rs11531656 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs11531707 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11534160 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs11536700 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11543981 | 0.83[AMR][1000 genomes] |
rs11543983 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11562139 | 0.83[AMR][1000 genomes] |
rs11562140 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12000610 | 0.87[AMR][1000 genomes] |
rs12235987 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs12238753 | 0.80[AMR][1000 genomes] |
rs13288412 | 0.87[AMR][1000 genomes] |
rs13289731 | 0.87[AMR][1000 genomes] |
rs1413418 | 0.85[AFR][1000 genomes] |
rs1576959 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs1576960 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1759452 | 0.93[AFR][1000 genomes] |
rs1759453 | 0.94[AFR][1000 genomes] |
rs1759459 | 0.93[AFR][1000 genomes] |
rs1759460 | 0.93[AFR][1000 genomes] |
rs1759461 | 0.93[AFR][1000 genomes] |
rs1759462 | 0.93[AFR][1000 genomes] |
rs1759616 | 0.93[AFR][1000 genomes] |
rs1759617 | 0.92[AFR][1000 genomes] |
rs1759619 | 0.93[AFR][1000 genomes] |
rs1759626 | 0.85[AFR][1000 genomes] |
rs1930643 | 0.92[AFR][1000 genomes] |
rs2039413 | 0.80[AMR][1000 genomes] |
rs2095145 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs2104914 | 0.82[AFR][1000 genomes] |
rs2383010 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2780204 | 0.93[AFR][1000 genomes] |
rs2780205 | 0.94[AFR][1000 genomes] |
rs2780207 | 0.94[AFR][1000 genomes] |
rs2891110 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3808785 | 0.93[AFR][1000 genomes] |
rs3814137 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs3814138 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs3814139 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs4147023 | 0.84[AFR][1000 genomes] |
rs4272490 | 0.83[EUR][1000 genomes] |
rs4430173 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs4458955 | 0.85[EUR][1000 genomes] |
rs55829722 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes] |
rs56402716 | 0.83[AMR][1000 genomes] |
rs57290709 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs57750931 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs585682 | 0.94[AFR][1000 genomes] |
rs599626 | 0.93[AFR][1000 genomes] |
rs600041 | 0.94[AFR][1000 genomes] |
rs600133 | 0.94[AFR][1000 genomes] |
rs614412 | 0.94[AFR][1000 genomes] |
rs614471 | 0.94[AFR][1000 genomes] |
rs619357 | 0.94[AFR][1000 genomes] |
rs631300 | 0.94[AFR][1000 genomes] |
rs632176 | 0.94[AFR][1000 genomes] |
rs632255 | 0.87[AFR][1000 genomes] |
rs632313 | 0.93[AFR][1000 genomes] |
rs634383 | 0.94[AFR][1000 genomes] |
rs634446 | 0.94[AFR][1000 genomes] |
rs643776 | 0.93[AFR][1000 genomes] |
rs647013 | 0.93[AFR][1000 genomes] |
rs6475121 | 0.87[EUR][1000 genomes] |
rs6475122 | 0.82[AMR][1000 genomes] |
rs6475124 | 0.82[AMR][1000 genomes] |
rs6475125 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs6475127 | 0.92[AFR][1000 genomes] |
rs6475128 | 0.89[AFR][1000 genomes] |
rs6475129 | 0.90[AFR][1000 genomes] |
rs672799 | 0.85[AFR][1000 genomes] |
rs677490 | 0.94[AFR][1000 genomes] |
rs679666 | 0.93[AFR][1000 genomes] |
rs7018856 | 0.85[AFR][1000 genomes] |
rs7020918 | 0.87[AMR][1000 genomes] |
rs7025912 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7027051 | 0.94[AFR][1000 genomes] |
rs7034768 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7035318 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7035525 | 0.84[AFR][1000 genomes] |
rs7037408 | 0.87[AMR][1000 genomes] |
rs7040098 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7040666 | 0.83[AMR][1000 genomes] |
rs7043703 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7044254 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7044783 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7046327 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs7874597 | 0.92[AFR][1000 genomes] |
rs9406667 | 0.81[AFR][1000 genomes] |
rs9407792 | 0.89[AFR][1000 genomes] |
rs9407804 | 0.94[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024799 | chr9:16631890-17431827 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
2 | esv2764141 | chr9:16903446-17351711 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv892658 | chr9:17041557-17532840 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
4 | nsv892660 | chr9:17134245-17269437 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
5 | nsv892661 | chr9:17134245-17532840 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
6 | nsv428537 | chr9:17146369-17308494 | Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv613693 | chr9:17147191-17710407 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
8 | nsv471287 | chr9:17165698-17708814 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
9 | nsv466269 | chr9:17165698-17710407 | Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
10 | nsv892662 | chr9:17168867-17329964 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
11 | nsv1031269 | chr9:17204320-17316969 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | nsv466270 | chr9:17236376-17377629 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
13 | nsv613694 | chr9:17236376-17377629 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
14 | nsv892663 | chr9:17243746-17329964 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
15 | nsv892664 | chr9:17250170-17296630 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
16 | nsv892665 | chr9:17250170-17371690 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
17 | nsv892666 | chr9:17256043-17280616 | Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:17223600-17279400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr9:17247400-17269000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
3 | chr9:17260600-17269000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
4 | chr9:17262600-17280400 | Weak transcription | Liver | Liver |
5 | chr9:17262800-17339800 | Weak transcription | Left Ventricle | heart |