Variant report
| Variant | rs60695036 |
|---|---|
| Chromosome Location | chr11:5339552-5339553 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:5337010..5339667-chr11:5367362..5370323,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11036815 | 0.87[ASN][1000 genomes] |
| rs11036849 | 0.82[ASN][1000 genomes] |
| rs12277703 | 0.88[ASN][1000 genomes] |
| rs12282313 | 0.88[ASN][1000 genomes] |
| rs12284766 | 0.84[ASN][1000 genomes] |
| rs2723384 | 0.91[ASN][1000 genomes] |
| rs2736566 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3886221 | 0.87[ASN][1000 genomes] |
| rs3886222 | 0.86[ASN][1000 genomes] |
| rs3886223 | 0.87[ASN][1000 genomes] |
| rs4578419 | 0.80[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60376796 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61227473 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6578600 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6578601 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6578602 | 0.87[ASN][1000 genomes] |
| rs6578603 | 0.80[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6578605 | 0.82[ASN][1000 genomes] |
| rs7115584 | 0.85[ASN][1000 genomes] |
| rs7118468 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7128856 | 0.88[ASN][1000 genomes] |
| rs7129490 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72873015 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72873016 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7925940 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7932505 | 0.86[ASN][1000 genomes] |
| rs7932632 | 0.88[ASN][1000 genomes] |
| rs7935554 | 0.88[ASN][1000 genomes] |
| rs7935560 | 0.88[ASN][1000 genomes] |
| rs7942925 | 0.85[ASN][1000 genomes] |
| rs7944760 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7946240 | 0.85[ASN][1000 genomes] |
| rs7946350 | 0.86[ASN][1000 genomes] |
| rs7946616 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524400 | chr11:5328361-5416622 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv1048608 | chr11:5328516-5645179 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 60 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046068 | chr11:5335943-6063742 | Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 89 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:5330400-5345000 | Weak transcription | K562 | blood |
