Variant report

Variant	rs60715288
Chromosome Location	chr8:60240089-60240090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56809909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015586	1.00[EUR][1000 genomes]
rs73260049	1.00[EUR][1000 genomes]
rs7830146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60236600-60245200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:60238400-60240200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:60238400-60241200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:60238400-60242400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:60238800-60240600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:60238800-60241000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:60238800-60242200	Enhancers	Primary hematopoietic stem cells	blood
8	chr8:60239200-60241800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:60239400-60241400	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:60239600-60241000	Enhancers	Primary T cells from cord blood	blood
11	chr8:60239800-60240600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:60240000-60240200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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