Variant report

Variant	rs7830146
Chromosome Location	chr8:60219477-60219478
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56809909	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015586	1.00[EUR][1000 genomes]
rs73260049	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60217400-60219600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:60217400-60220800	Enhancers	Adipose Nuclei	Adipose
3	chr8:60217600-60219600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:60217800-60221000	Enhancers	Fetal Lung	lung
5	chr8:60218000-60219600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:60218200-60219800	Enhancers	Fetal Heart	heart
7	chr8:60218200-60220400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:60218400-60220000	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:60218400-60221800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:60218600-60219600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:60218800-60223000	Enhancers	Dnd41	blood
12	chr8:60219000-60219800	Enhancers	Fetal Kidney	kidney
13	chr8:60219000-60221000	Enhancers	Fetal Stomach	stomach
14	chr8:60219000-60221000	Enhancers	HUVEC	blood vessel
15	chr8:60219200-60219600	Enhancers	Small Intestine	intestine
16	chr8:60219200-60220600	Weak transcription	Fetal Brain Female	brain
17	chr8:60219200-60220600	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:60219200-60220800	Enhancers	Fetal Brain Male	brain
19	chr8:60219200-60221000	Enhancers	Hela-S3	cervix
20	chr8:60219400-60219600	Enhancers	Psoas Muscle	Psoas
21	chr8:60219400-60220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:60219400-60220800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:60219400-60220800	Enhancers	Colon Smooth Muscle	Colon
24	chr8:60219400-60220800	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr8:60219400-60222600	Weak transcription	Brain Germinal Matrix	brain

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