Variant report

Variant	rs60725960
Chromosome Location	chr11:34841925-34841926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032901	1.00[AMR][1000 genomes]
rs16925912	1.00[AMR][1000 genomes]
rs16925918	1.00[AMR][1000 genomes]
rs56852627	1.00[AMR][1000 genomes]
rs59338646	1.00[AMR][1000 genomes]
rs7932205	1.00[AMR][1000 genomes]
rs7934718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34839400-34844000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:34840600-34844400	Weak transcription	HepG2	liver
4	chr11:34841400-34842200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:34841400-34842200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:34841600-34842000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:34841800-34842200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:34841800-34842200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:34841800-34842200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:34841800-34842200	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links