Variant report

Variant	rs7932205
Chromosome Location	chr11:34987767-34987768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11032901	1.00[AMR][1000 genomes]
rs56852627	1.00[AMR][1000 genomes]
rs60725960	1.00[AMR][1000 genomes]
rs7943864	0.84[AFR][1000 genomes]
rs9666783	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2754010	chr11:34940724-35001024	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34938800-34990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:34939200-35000000	Weak transcription	Thymus	Thymus
3	chr11:34948000-34990600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:34948000-35000400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:34948000-35006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:34948200-34997000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:34948600-34990400	Weak transcription	HUVEC	blood vessel
8	chr11:34949200-34990400	Weak transcription	NHEK	skin
9	chr11:34950400-34991600	Weak transcription	NHLF	lung
10	chr11:34951600-34992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:34951800-34988200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:34951800-35000200	Weak transcription	Psoas Muscle	Psoas
13	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
14	chr11:34952400-34990200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:34954600-34987800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:34954600-34991200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:34954800-34988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:34955000-34988200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:34955400-34989000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:34956400-34990600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:34958200-34991600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:34958200-34995600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:34961400-34990400	Weak transcription	Osteobl	bone
25	chr11:34961800-34997200	Weak transcription	HSMMtube	muscle
26	chr11:34962000-35008200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:34962600-34998000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:34962800-35006600	Weak transcription	Esophagus	oesophagus
29	chr11:34963600-34988200	Weak transcription	Right Ventricle	heart
30	chr11:34963800-34993800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:34965400-35008200	Weak transcription	Gastric	stomach
32	chr11:34969400-34999200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:34970000-34989000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:34970000-35000400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:34970200-34990600	Weak transcription	NH-A	brain
36	chr11:34973800-34997000	Weak transcription	HMEC	breast
37	chr11:34974800-34990600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:34975000-34988200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:34975000-34994400	Weak transcription	Fetal Kidney	kidney
40	chr11:34975400-35006800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:34976600-35018400	Weak transcription	Spleen	Spleen
42	chr11:34977800-35009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:34979600-34988200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:34979600-34988200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:34979600-34989000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:34980000-34990400	Weak transcription	GM12878-XiMat	blood
47	chr11:34980200-34996000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:34981000-34992400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:34981000-34996400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:34981200-34995600	Weak transcription	Brain Angular Gyrus	brain

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