Variant report

Variant	rs6072770
Chromosome Location	chr20:41157707-41157708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:41156659..41159808-chr20:41161331..41164447,3	MCF-7	breast:
2	chr20:41150606..41154856-chr20:41155913..41160974,4	MCF-7	breast:
3	chr1:115322010..115324923-chr20:41157640..41159690,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052723	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12106011	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs12106102	0.88[ASN][1000 genomes]
rs2207885	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2207886	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs2867484	0.82[ASW][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap]
rs6016816	0.87[CEU][hapmap];0.94[TSI][hapmap]
rs6030291	0.87[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap]
rs6072767	0.84[CHB][hapmap];1.00[CHD][hapmap]
rs6072768	0.84[CHB][hapmap]
rs6072771	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs6072776	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6093670	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6093672	0.87[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6102880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs6102888	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.81[TSI][hapmap]
rs6102894	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6102895	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs6102896	0.84[ASN][1000 genomes]
rs6102904	0.80[ASN][1000 genomes]
rs66464743	0.94[ASN][1000 genomes]
rs8115216	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv586006	chr20:41157707-41290936	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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