Variant report

Variant	rs6030291
Chromosome Location	chr20:41138259-41138260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2205939	0.81[JPT][hapmap]
rs2207885	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2207886	0.86[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs6016806	0.93[YRI][hapmap]
rs6016816	1.00[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs6030275	0.81[AFR][1000 genomes]
rs6030276	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs6030277	0.85[LWK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs6072759	0.81[JPT][hapmap]
rs6072767	1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap]
rs6072768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6072770	0.87[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6072771	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs6072775	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs6072776	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6093657	0.81[JPT][hapmap]
rs6093659	0.93[YRI][hapmap]
rs6093660	0.85[LWK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs6093669	0.81[JPT][hapmap]
rs6093670	0.81[EUR][1000 genomes]
rs6102855	0.96[YRI][hapmap]
rs6102856	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs6102871	0.96[YRI][hapmap]
rs6102880	0.87[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap]
rs6102888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6102895	0.84[CHB][hapmap];0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs6102904	0.82[ASN][1000 genomes]
rs61055710	0.83[ASN][1000 genomes]
rs66464743	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1807209	chr20:41107678-41154898	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv2762074	chr20:41131791-41140138	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3380676	chr20:41136863-41139011	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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