Variant report

Variant	rs6093669
Chromosome Location	chr20:41146382-41146383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:115299136..115301683-chr20:41145782..41147834,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009307	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1033642	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1033643	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12106011	0.80[CEU][hapmap]
rs1569908	0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2064676	0.83[ASN][1000 genomes]
rs2064677	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2064678	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2205939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs58811143	0.80[EUR][1000 genomes]
rs6016816	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6030291	0.81[JPT][hapmap]
rs6065496	0.80[CEU][hapmap];0.94[JPT][hapmap]
rs6072758	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6072759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6072767	1.00[CEU][hapmap]
rs6072768	1.00[CEU][hapmap]
rs6072771	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6072773	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6072775	0.82[CEU][hapmap]
rs6093657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6093670	0.87[ASN][1000 genomes]
rs6093672	0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs6093673	0.83[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6102853	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6102888	0.81[JPT][hapmap]
rs6102894	0.87[ASN][1000 genomes]
rs6102895	0.83[CEU][hapmap]
rs6102897	0.80[ASN][1000 genomes]
rs6102899	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs6102904	0.83[CEU][hapmap]
rs66464743	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66955877	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73127302	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1807209	chr20:41107678-41154898	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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