Variant report

Variant	rs6072859
Chromosome Location	chr20:41392140-41392141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1015314	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3746533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6065531	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6065532	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6065533	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6065534	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6072856	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6072857	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6072858	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6072860	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6072861	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6072862	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6072864	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6072865	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6513812	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9808582	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41389000-41392400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:41391800-41392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:41392000-41393800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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