Variant report

Variant	rs60729624
Chromosome Location	chr12:41202072-41202073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs57874154	1.00[AFR][1000 genomes]
rs58093662	1.00[AFR][1000 genomes]
rs58649501	1.00[AFR][1000 genomes]
rs60171128	1.00[AFR][1000 genomes]
rs61381793	0.94[AFR][1000 genomes]
rs66467974	0.81[AFR][1000 genomes]
rs73114703	0.94[AFR][1000 genomes]
rs73114704	0.94[AFR][1000 genomes]
rs73114707	0.97[AFR][1000 genomes]
rs73114713	0.97[AFR][1000 genomes]
rs73114715	1.00[AFR][1000 genomes]
rs73114717	1.00[AFR][1000 genomes]
rs73114719	1.00[AFR][1000 genomes]
rs73114720	1.00[AFR][1000 genomes]
rs73114722	1.00[AFR][1000 genomes]
rs73114723	1.00[AFR][1000 genomes]
rs73114724	1.00[AFR][1000 genomes]
rs73114725	0.90[AFR][1000 genomes]
rs73114727	1.00[AFR][1000 genomes]
rs73114729	1.00[AFR][1000 genomes]
rs73114731	1.00[AFR][1000 genomes]
rs73116746	1.00[AFR][1000 genomes]
rs73116747	1.00[AFR][1000 genomes]
rs73116774	1.00[AFR][1000 genomes]
rs73116780	1.00[AFR][1000 genomes]
rs73116785	1.00[AFR][1000 genomes]
rs73116786	1.00[AFR][1000 genomes]
rs73116787	1.00[AFR][1000 genomes]
rs73116791	1.00[AFR][1000 genomes]
rs73116793	1.00[AFR][1000 genomes]
rs73116794	1.00[AFR][1000 genomes]
rs73116796	1.00[AFR][1000 genomes]
rs73116798	1.00[AFR][1000 genomes]
rs73116800	1.00[AFR][1000 genomes]
rs73116801	0.83[AFR][1000 genomes]
rs73116802	1.00[AFR][1000 genomes]
rs73118713	1.00[AFR][1000 genomes]
rs73118714	1.00[AFR][1000 genomes]
rs73118715	1.00[AFR][1000 genomes]
rs73118716	1.00[AFR][1000 genomes]
rs73118717	1.00[AFR][1000 genomes]
rs73118719	1.00[AFR][1000 genomes]
rs73118720	1.00[AFR][1000 genomes]
rs73118723	1.00[AFR][1000 genomes]
rs73118726	0.83[AFR][1000 genomes]
rs73118729	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832379	chr12:41054440-41232749	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469362	chr12:41155000-41206520	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv558697	chr12:41155000-41206520	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv469363	chr12:41155000-41214848	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv558698	chr12:41155000-41214848	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41188800-41202600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:41201200-41203400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:41201400-41203600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:41202000-41202400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:41202000-41202600	Weak transcription	A549	lung

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