Variant report

Variant	rs73118729
Chromosome Location	chr12:41218951-41218952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs57874154	0.83[AFR][1000 genomes]
rs58093662	0.83[AFR][1000 genomes]
rs58649501	0.83[AFR][1000 genomes]
rs60171128	0.83[AFR][1000 genomes]
rs60729624	0.83[AFR][1000 genomes]
rs73114707	0.81[AFR][1000 genomes]
rs73114713	0.81[AFR][1000 genomes]
rs73114715	0.83[AFR][1000 genomes]
rs73114717	0.83[AFR][1000 genomes]
rs73114719	0.83[AFR][1000 genomes]
rs73114720	0.83[AFR][1000 genomes]
rs73114722	0.83[AFR][1000 genomes]
rs73114723	0.83[AFR][1000 genomes]
rs73114724	0.83[AFR][1000 genomes]
rs73114727	0.83[AFR][1000 genomes]
rs73114729	0.83[AFR][1000 genomes]
rs73114731	0.83[AFR][1000 genomes]
rs73116746	0.83[AFR][1000 genomes]
rs73116747	0.83[AFR][1000 genomes]
rs73116774	0.83[AFR][1000 genomes]
rs73116780	0.83[AFR][1000 genomes]
rs73116785	0.83[AFR][1000 genomes]
rs73116786	0.83[AFR][1000 genomes]
rs73116787	0.83[AFR][1000 genomes]
rs73116791	0.83[AFR][1000 genomes]
rs73116793	0.83[AFR][1000 genomes]
rs73116794	0.83[AFR][1000 genomes]
rs73116796	0.83[AFR][1000 genomes]
rs73116798	0.83[AFR][1000 genomes]
rs73116800	0.83[AFR][1000 genomes]
rs73116801	1.00[AFR][1000 genomes]
rs73116802	0.83[AFR][1000 genomes]
rs73118713	0.83[AFR][1000 genomes]
rs73118714	0.83[AFR][1000 genomes]
rs73118715	0.83[AFR][1000 genomes]
rs73118716	0.83[AFR][1000 genomes]
rs73118717	0.83[AFR][1000 genomes]
rs73118719	0.83[AFR][1000 genomes]
rs73118720	0.83[AFR][1000 genomes]
rs73118723	0.83[AFR][1000 genomes]
rs73118726	1.00[AFR][1000 genomes]
rs73118727	0.89[AFR][1000 genomes]
rs73118736	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832379	chr12:41054440-41232749	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3435443	chr12:41206734-41222972	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41214000-41223200	Weak transcription	NHEK	skin
2	chr12:41214200-41220200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:41214200-41221400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:41214200-41221600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:41214400-41220600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:41214400-41221600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:41217400-41221400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:41218600-41221400	Weak transcription	Fetal Brain Male	brain
9	chr12:41218800-41219000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:41218800-41219200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:41218800-41219400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:41218800-41219800	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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