Variant report

Variant	rs60730012
Chromosome Location	chr5:40630345-40630346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12186529	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12651829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12656010	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1395085	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28544515	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861121	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6877753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6892418	0.98[ASN][1000 genomes]
rs73080590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40620800-40634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:40624800-40634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:40629200-40630400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:40630000-40630400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:40630000-40630600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:40630000-40631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:40630200-40630600	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:40630200-40630600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr5:40630200-40630600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:40630200-40630600	Enhancers	Dnd41	blood
11	chr5:40630200-40630800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:40630200-40631600	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links