Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10078260	0.88[ASN][1000 genomes]
rs12153636	0.97[ASN][1000 genomes]
rs12186529	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12651816	0.89[AFR][1000 genomes]
rs12651829	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655549	0.92[AFR][1000 genomes]
rs1395084	0.89[ASN][1000 genomes]
rs1395085	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28435248	0.87[ASN][1000 genomes]
rs28544515	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4466213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4957341	0.81[CEU][hapmap]
rs60730012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859166	0.99[ASN][1000 genomes]
rs6861121	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6877753	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6893430	0.98[ASN][1000 genomes]
rs73080590	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719046	0.98[ASN][1000 genomes]
rs7734916	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40641800-40648400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:40644000-40654600	Weak transcription	Small Intestine	intestine
3	chr5:40645200-40648200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr5:40646400-40652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:40646600-40652400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:40646800-40648000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:40647200-40652400	Weak transcription	Duodenum Mucosa	Duodenum

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