Variant report

Variant	rs10078260
Chromosome Location	chr5:40656337-40656338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12153636	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12186529	0.92[ASN][1000 genomes]
rs12651829	0.84[ASN][1000 genomes]
rs12656010	0.88[ASN][1000 genomes]
rs1395084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1395085	0.98[ASN][1000 genomes]
rs28435248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4432939	0.87[AFR][1000 genomes]
rs4466213	0.86[ASN][1000 genomes]
rs6859166	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6861121	0.98[ASN][1000 genomes]
rs6877753	0.87[ASN][1000 genomes]
rs6892418	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6893430	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7719046	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7734916	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40654800-40656400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:40655200-40657000	Enhancers	Hela-S3	cervix
3	chr5:40655600-40656400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:40655600-40656400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:40655600-40656600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:40655600-40656800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:40655600-40657000	Enhancers	Primary T cells from cord blood	blood
8	chr5:40655600-40660600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:40655600-40660600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:40655600-40669600	Weak transcription	Thymus	Thymus
11	chr5:40656000-40656400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:40656200-40656600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:40656200-40658200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:40656200-40658200	Weak transcription	Dnd41	blood
15	chr5:40656200-40658600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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