Variant report

Variant	rs12153636
Chromosome Location	chr5:40651183-40651184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10078260	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12186529	0.84[ASN][1000 genomes]
rs12651829	0.93[ASN][1000 genomes]
rs12656010	0.97[ASN][1000 genomes]
rs1395084	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1395085	0.89[ASN][1000 genomes]
rs28435248	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4466213	0.95[ASN][1000 genomes]
rs6859166	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6861121	0.89[ASN][1000 genomes]
rs6877753	0.96[ASN][1000 genomes]
rs6892418	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6893430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7719046	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7734916	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40644000-40654600	Weak transcription	Small Intestine	intestine
2	chr5:40646400-40652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:40646600-40652400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:40647200-40652400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:40648200-40653200	Enhancers	Primary T cells from cord blood	blood
6	chr5:40648400-40651200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr5:40648400-40651600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:40648400-40652400	Enhancers	Dnd41	blood
9	chr5:40648600-40651800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr5:40648800-40652600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:40649200-40651200	Enhancers	Thymus	Thymus
12	chr5:40649800-40652600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:40650200-40652000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:40650200-40652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:40650200-40652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:40650200-40652600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:40650200-40652800	Weak transcription	Primary B cells from cord blood	blood
18	chr5:40650200-40652800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:40650400-40652400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr5:40650400-40652400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:40650400-40652600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:40650400-40652600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:40650400-40652800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr5:40650400-40653400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:40650400-40654400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr5:40650600-40652200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:40650600-40652400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:40650800-40652200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:40650800-40652200	Weak transcription	Fetal Thymus	thymus
30	chr5:40650800-40652600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:40651000-40652000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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