Variant report

Variant	rs28435248
Chromosome Location	chr5:40655316-40655317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10078260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153636	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12186529	0.93[ASN][1000 genomes]
rs12651829	0.83[ASN][1000 genomes]
rs12656010	0.87[ASN][1000 genomes]
rs1395084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1395085	0.96[ASN][1000 genomes]
rs4432939	0.89[AFR][1000 genomes]
rs4466213	0.85[ASN][1000 genomes]
rs6859166	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6861121	0.96[ASN][1000 genomes]
rs6877753	0.86[ASN][1000 genomes]
rs6892418	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6893430	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7719046	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7734916	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40652200-40655400	Enhancers	Fetal Thymus	thymus
2	chr5:40652400-40655600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:40652400-40655600	Enhancers	Thymus	Thymus
4	chr5:40652400-40655600	Flanking Active TSS	Dnd41	blood
5	chr5:40652600-40655400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:40652600-40655600	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:40654000-40655600	Active TSS	Primary T cells fromperipheralblood	blood
8	chr5:40654000-40655600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr5:40654200-40655600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:40654400-40655400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr5:40654400-40655600	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr5:40654400-40655600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr5:40654400-40655600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr5:40654400-40655600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:40654600-40655600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:40654600-40655600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:40654800-40655600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:40654800-40656400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:40655000-40655400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:40655200-40655400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:40655200-40655400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr5:40655200-40655600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr5:40655200-40655600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:40655200-40655600	Enhancers	HUVEC	blood vessel
25	chr5:40655200-40657000	Enhancers	Hela-S3	cervix

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