Variant report
| Variant | rs60733834 |
|---|---|
| Chromosome Location | chr11:26495339-26495340 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | REST | chr11:26495295-26495881 | H1-neurons | neurons: | n/a | n/a |
| 2 | JUN | chr11:26495253-26495457 | HepG2 | liver: | n/a | chr11:26495317-26495326 chr11:26495316-26495328 chr11:26495317-26495327 chr11:26495321-26495328 |
| 3 | JUND | chr11:26495193-26495393 | HepG2 | liver: | n/a | chr11:26495316-26495327 chr11:26495317-26495326 chr11:26495316-26495328 chr11:26495317-26495327 chr11:26495321-26495328 |
| 4 | REST | chr11:26494740-26496034 | H1-neurons | neurons: | n/a | n/a |
| 5 | EP300 | chr11:26495115-26495409 | SK-N-SH_RA | brain: | n/a | chr11:26495343-26495350 |
| 6 | EP300 | chr11:26495083-26495540 | SK-N-SH_RA | brain: | n/a | chr11:26495343-26495350 |
| 7 | NFYB | chr11:26495330-26495414 | GM12878 | blood: | n/a | chr11:26495334-26495346 chr11:26495337-26495347 |
| 8 | EP300 | chr11:26493793-26495855 | SK-N-SH | brain: | n/a | chr11:26495343-26495350 chr11:26494900-26494910 chr11:26493862-26493870 chr11:26495799-26495813 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ANO3 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11029581 | 0.85[AMR][1000 genomes] |
| rs11029585 | 0.85[AMR][1000 genomes] |
| rs12291959 | 0.85[AMR][1000 genomes] |
| rs12292046 | 0.85[AMR][1000 genomes] |
| rs12295695 | 0.85[AMR][1000 genomes] |
| rs1602933 | 0.85[AMR][1000 genomes] |
| rs1858109 | 0.85[AMR][1000 genomes] |
| rs1908175 | 0.85[AMR][1000 genomes] |
| rs1995801 | 0.85[AMR][1000 genomes] |
| rs4274172 | 0.85[AMR][1000 genomes] |
| rs57887869 | 1.00[EUR][1000 genomes] |
| rs59284407 | 0.85[AMR][1000 genomes] |
| rs7110978 | 0.85[AMR][1000 genomes] |
| rs7115512 | 0.85[AMR][1000 genomes] |
| rs7119520 | 0.85[AMR][1000 genomes] |
| rs73430211 | 0.85[AMR][1000 genomes] |
| rs73430214 | 0.85[AMR][1000 genomes] |
| rs73430247 | 0.85[AMR][1000 genomes] |
| rs73430271 | 0.85[AMR][1000 genomes] |
| rs73430288 | 0.85[AMR][1000 genomes] |
| rs73447723 | 1.00[EUR][1000 genomes] |
| rs73447728 | 0.85[AMR][1000 genomes] |
| rs73447731 | 0.85[AMR][1000 genomes] |
| rs73447736 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051211 | chr11:26473131-26604553 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv467778 | chr11:26485520-26603926 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv553899 | chr11:26485520-26603926 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv521916 | chr11:26485520-26605331 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26472000-26503600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr11:26494800-26495600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr11:26494800-26495600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
