Variant report
| Variant | rs73447736 |
|---|---|
| Chromosome Location | chr11:26505065-26505066 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11029581 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11029585 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12291959 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12292046 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12295695 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1602933 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1858109 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1908175 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1995801 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs293947 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4274172 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs59284407 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60733834 | 0.85[AMR][1000 genomes] |
| rs7110978 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7115512 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7119520 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73430211 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73430214 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73430247 | 1.00[AMR][1000 genomes] |
| rs73430271 | 1.00[AMR][1000 genomes] |
| rs73430288 | 1.00[AMR][1000 genomes] |
| rs73447728 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73447731 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051211 | chr11:26473131-26604553 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv467778 | chr11:26485520-26603926 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv553899 | chr11:26485520-26603926 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv521916 | chr11:26485520-26605331 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26505000-26505800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
