Variant report

Variant	rs6074197
Chromosome Location	chr20:10883485-10883486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1120782	1.00[ASN][1000 genomes]
rs17800010	1.00[CHB][hapmap]
rs1884135	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144184	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223977	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813038	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040211	1.00[ASN][1000 genomes]
rs6040216	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074221	1.00[CHB][hapmap]
rs62187873	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7268001	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10878600-10883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:10879800-10883600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
4	chr20:10882600-10883800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:10882600-10883800	Enhancers	Fetal Brain Female	brain
6	chr20:10882600-10884000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:10882600-10884200	Enhancers	Brain Germinal Matrix	brain
8	chr20:10882600-10884200	Enhancers	Fetal Lung	lung
9	chr20:10882600-10884600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:10882600-10884600	Enhancers	Fetal Stomach	stomach
11	chr20:10882600-10884600	Enhancers	HSMM	muscle
12	chr20:10882600-10884800	Enhancers	Fetal Muscle Leg	muscle
13	chr20:10882600-10885000	Enhancers	HSMMtube	muscle
14	chr20:10882800-10883800	Enhancers	Fetal Kidney	kidney
15	chr20:10882800-10884600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:10882800-10884600	Enhancers	NHDF-Ad	bronchial
17	chr20:10882800-10884800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr20:10882800-10884800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr20:10883000-10884000	Enhancers	Adipose Nuclei	Adipose
20	chr20:10883000-10884800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr20:10883200-10883600	Enhancers	Fetal Intestine Small	intestine
22	chr20:10883200-10884000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr20:10883200-10884000	Enhancers	Fetal Intestine Large	intestine
24	chr20:10883200-10884000	Enhancers	NHEK	skin
25	chr20:10883400-10884400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr20:10883400-10884800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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