Variant report

Variant	rs60749048
Chromosome Location	chr12:118874808-118874809
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10507288	1.00[AMR][1000 genomes]
rs16948173	1.00[AMR][1000 genomes]
rs16948189	1.00[AMR][1000 genomes]
rs16948195	1.00[AMR][1000 genomes]
rs16948199	1.00[AMR][1000 genomes]
rs16948225	1.00[AMR][1000 genomes]
rs16948241	1.00[AMR][1000 genomes]
rs16948245	1.00[AMR][1000 genomes]
rs16948258	1.00[AMR][1000 genomes]
rs16948259	1.00[AMR][1000 genomes]
rs16948262	1.00[AMR][1000 genomes]
rs17433259	1.00[AMR][1000 genomes]
rs55965100	1.00[AMR][1000 genomes]
rs56210304	1.00[AMR][1000 genomes]
rs56319724	1.00[AMR][1000 genomes]
rs56743940	1.00[AMR][1000 genomes]
rs56802741	1.00[AMR][1000 genomes]
rs56819745	1.00[AMR][1000 genomes]
rs57170485	1.00[AMR][1000 genomes]
rs57865918	1.00[AMR][1000 genomes]
rs58340234	1.00[AMR][1000 genomes]
rs58797246	1.00[AMR][1000 genomes]
rs59036425	1.00[AMR][1000 genomes]
rs59558138	1.00[AMR][1000 genomes]
rs60160994	1.00[AMR][1000 genomes]
rs60917706	1.00[AMR][1000 genomes]
rs7963735	1.00[AMR][1000 genomes]
rs7963880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899547	chr12:118791441-118896304	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118871200-118881800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118873800-118876000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:118874000-118875800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:118874000-118876000	Enhancers	NHDF-Ad	bronchial
5	chr12:118874200-118875200	Enhancers	HSMM	muscle
6	chr12:118874400-118875400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:118874400-118875800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:118874600-118875200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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