Variant report

Variant	rs6075037
Chromosome Location	chr20:16229269-16229270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16997379	0.94[ASN][1000 genomes]
rs6034427	0.91[ASN][1000 genomes]
rs6043830	0.91[ASN][1000 genomes]
rs6080190	0.91[ASN][1000 genomes]
rs6105553	0.94[ASN][1000 genomes]
rs6110979	0.94[ASN][1000 genomes]
rs6110981	0.88[ASN][1000 genomes]
rs6110983	0.91[ASN][1000 genomes]
rs6110985	0.91[ASN][1000 genomes]
rs6131798	0.86[ASN][1000 genomes]
rs6135707	0.82[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6135712	0.89[ASN][1000 genomes]
rs6135713	0.98[ASN][1000 genomes]
rs73249308	0.82[ASN][1000 genomes]
rs9973984	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16228200-16229400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:16228600-16229400	Enhancers	Brain Substantia Nigra	brain
3	chr20:16228800-16229400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:16229000-16229400	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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