Variant report

Variant	rs6080190
Chromosome Location	chr20:16224640-16224641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16997379	0.85[ASN][1000 genomes]
rs6034427	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043830	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075037	0.91[ASN][1000 genomes]
rs6080191	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6105553	0.86[ASN][1000 genomes]
rs6110979	0.85[ASN][1000 genomes]
rs6110981	0.97[ASN][1000 genomes]
rs6110983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6110985	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6135707	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs6135712	0.98[ASN][1000 genomes]
rs6135713	0.89[ASN][1000 genomes]
rs9973984	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16217400-16226800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:16222800-16229000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr20:16224200-16224800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:16224600-16224800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr20:16224600-16227200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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